/\/\ he said it cranks, so starter should be fine
you did it wrong: you took the key out
Auto Learn
Time required, approximately 30 minutes.
Insure that the battery is fully charged.
Use the scan tool in order to clear the DTCs.
Turn the ignition switch from the OFF position to the CRANK position attempting to start the vehicle. The vehicle will start and then stall.
Leave the ignition switch in the ON position while observing the security indicator.
When the security indicator turns off, which can take up to 10 minutes, turn the ignition switch off. Wait 10 seconds.
Repeat Steps 3 through 5 two more times (3 times total).
The BCM and the PCM will learn the new code on the next start attempt
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